We’re looking at two related pieces of this:
1) For OneDrive for Business, enable shared folders to be added to the root of the OneDrive folder at all (like in OneDrive Personal).
2) For OneDrive across business and personal, enable shared folders to be placed into subfolders.
We appreciate your patience; this is significant engineering work given the architecture of the products and our diverse customer base, spanning individuals to small businesses to multi-national enterprises to government agencies. We aim to address this while maintaining our industry-leading security, privacy, and compliance commitments.
Thank you for the continued feedback.Bekah commented
This is a huge oversight from Microsoft. Disappointed. My office wants to use this service but we really need to be able to organize the shared files, as saving them to OneDrive won't show the updates that users make to the documents saved in the "Files" section. That completely ruins the point of using OneDrive in the first place if we have to replace the files every time someone updates them.